Publications

​Celii, B., Papadopoulos, S., Ding, Z., Fahey, P. G., Wang, E., Papadopoulos, C., Kunin, A. B., Patel, S., Bae, J. A., Bodor, A. L., Brittain, D., Buchanan, J., Bumbarger, D. J., Castro, M. A., Cobos, E., Dorkenwald, S., Elabbady, L., Halageri, A., Jia, Z., … Reimer, J. (2025). NEURD offers automated proofreading and feature extraction for connectomics. Nature, 640, 487–496. https://doi.org/10.1038/s41586-025-08660-5

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Ding, Z., Fahey, P. G., Papadopoulos, S., Wang, E. Y., Celii, B., Papadopoulos, C., Chang, A., Kunin, A. B., Tran, D., Fu, J., Ding, Z., Patel, S., Ntanavara, L., Froebe, R., Ponder, K., Muhammad, T., Bae, J. A., Bodor, A. L., Brittain, D., Reimer, J.*, … Tolias, A. S.* (2025). Functional connectomics reveals general wiring rule in mouse visual cortex. Nature, 640, 459–469. https://doi.org/10.1038/s41586-025-08840-3 *co-corresponding authors

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Neyhart, E., Zhou, N., Munn, B. R., Law, R. G., Smith, C., Mridha, Z. H., Blanco, F. A., Li, G., Li, Y., Hu, M., McGinley, M. J., Shine, J. M., & Reimer, J. (2024). Cortical acetylcholine dynamics are predicted by cholinergic axon activity and behavior state. Cell Reports, 43(10). https://doi.org/10.1016/j.celrep.2024.114808

 

Pirhayati*, D., Smith*, C. L., Kroeger, R., Navlakha, S., Pfaffinger, P., Reimer, J., Arenkiel, B. R., Patel, A., & Moss, E. H. (2024). Dense and persistent odor representations in the olfactory bulb of awake mice. Journal of Neuroscience, 44(39). https://doi.org/10.1523/JNEUROSCI.0116-24.2024 *co-first authors

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Franke, K., Willeke, K. F., Ponder, K., Galdamez, M., Zhou, N., Muhammad, T., Patel, S., Froudarakis, E., Reimer, J., Sinz, F. H., & Tolias, A. S. (2022). State-dependent pupil dilation rapidly shifts visual feature selectivity. Nature, 610(7930), Article 7930. https://doi.org/10.1038/s41586-022-05270-3

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Liu, Z., Lu, X., Villette, V., Gou, Y., Colbert, K. L., Lai, S., Guan, S., Land, M. A., Lee, J., Assefa, T., Zollinger, D. R., Korympidou, M. M., Vlasits, A. L., Pang, M. M., Su, S., Cai, C., Froudarakis, E., Zhou, N., Patel, S. S., … St-Pierre, F. (2022). Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy. Cell, 185(18), 3408-3425.e29. https://doi.org/10.1016/j.cell.2022.07.013

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Reimer, J., McGinley, M. J., Liu, Y., Rodenkirch, C., Wang, Q., McCormick, D. A., & Tolias, A. S. (2016). Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex. Nature Communications, 7(1), 13289. https://doi.org/10.1038/ncomms13289

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